In the FT "negative frequencies" means nothing physically, however they are essential in the maths behind the FT.
The FT is nothing more than a change of base.
If we take an example with a door function p(t),
\begin{equation}
p(t)
\begin{cases}
1 & \text{ if } -\frac{1}{2}\leq t\leq\frac{1}{2} \\
0 & \text{ elsewhere }
\end{cases}
\end{equation}
We apply the fourier transform on this signal,
\begin{equation}
\mathcal{F}(\nu)=\int_{-\infty}^{+\infty}p(t)e^{-2i\pi\nu}dt
\end{equation}
Since the signal is present between $-\frac{1}{2}\leq t \leq\frac{1}{2}$
\begin{equation}
\mathcal{F}(\nu)= \frac{sinc(\pi\nu)}{\pi\nu}
\end{equation}
The absolute value of the fourier transform is displayed below.

Imagine you want to retrieve your original signal from the FT, $\mathcal{F}(\nu)$, you will need to apply the inverse fourier transform defined as :
\begin{equation}
p(t)=\int_{-\infty}^{+\infty}\mathcal{F}(\nu)e^{2i\pi\nu}dt
\end{equation}
The signal we are trying to integrate is defined between -$\infty$ and $+\infty$ and that's why you need to keep the negative part, otherewise you won't be able to go back to the initial basis.
In the article you saw, they call "negative frequencies", indexes because it is directly derived from the discrete fourier transform.
To answer your last question, i guess that every signal can be represented as a sum of complex sinuoïds if its area under the curve is integrable. The Fourier Transform can be seen as a development of the fourier series of a signal with an infinite period. (Correct me if i'm wrong)