The paper (arXiv version) actually finds a mass limit of $M_{\mathrm{TOV}}=2.25^{+0.08}_{-0.07}M_{\odot}$; it is believed that above this limit, subject to some caveats, a neutron star would further collapse into a black hole. The range $M\sim2.5\mathrm{-}3M_{\odot}$ really refers to compact objects that have been detected in gravitational wave events; they're mentioned just to indicate that according to the analysis, they are in fact likely the lowest-mass black holes known. LIGO/Virgo gravitational wave data alone could not determine whether that class of objects are neutron stars or black holes.
"Non-rotating" really does mean non-rotating. The equation governing models, the Tolman-Oppenheimer-Volkoff equation, assumes the star is not rotating. Since we would expect all neutron stars to rotate to some degree, and since the paper is based on a selection of real neutron stars, it might appear the data isn't applicable! However -- and this is a point the paper and articles maybe don't emphasize enough -- most reasonable spin periods do not significantly change the mass limit of a neutron star. For all but the fastest-spinning neutron stars, the difference would not be more than a percent or so (Alsing et al. 2018), and it is only for the very shortest possible spin periods that we would see deviations of up to 20% (Breu & Rezzolla 2016). No known pulsars spin fast enough to change the limit by more than ~2%.
The authors therefore assume that most of the neutron stars in the sample can be modeled as slow rotators. Three (PSR J0952-060, PSR J2215+5135, and PSR J0740+6620) have short enough rotation periods that an adjustment must be made, which they do using relations derived from simulations. They therefore believe the results are valid.
For what it's worth, since the paper's computed uncertainties on the mass limit are ~4%, any variation due to rotation among the other neutron stars in the sample is a factor of a few less, and those uncertainties dominate. It certainly doesn't affect their conclusion regarding the type of objects in the $2.5\mathrm{-}3M_{\odot}$ range.