I think a clear way to rephrase this question would be "How beneficial a mutation needs to be to behave really differently from neutral mutations?". I am answering to this question.
Neutral mutations and nearly neutral mutations
The probability of fixation of a new neutral mutation is $P_{neutral}=\frac{1}{2N}$, where $N$ is the population size. An intuitive way to understand why this is true is that, after an infinite amount of time (constant population size and in absence of speciation), the whole population will necessarily descend from a single individual. In absence of selection pressure every single individual has the same probability to be the ancestor. As a fraction of $\frac{1}{2N}$ of the population is carrying the mutant allele when it first occur, then the probability that his allele reaches fixation is $\frac{1}{2N}$. In fact, this result can be generalize to say that the probability of fixation of a neutral mutation present at frequency $p$ at a given time in the population has a probability $P_{neutral}=p$ to get fixed.
Given the selection coefficient $s$, a good approximation is that whenever $2Ns<<1$, then the probability of fixation is essentially not different from $P_{neutral}$.
This qualitative boundary ($2Ns<<1$ or $2Ns>>1$) is the boundary you were interested in. In your post you talk about "percentage advantage". This percentage advantage is just $s\cdot 100$.
Beneficial mutations
For "significantly" beneficial mutations, a good approximation to the probability of fixation of a newly arisen mutation given $s$ and $N$ is
$$\frac{1-e^{-s}}{1-e^{-2Ns}}$$
Source of information
Your question shows a few misunderstanding and is nested within the field of population genetics. Plus, in absence of good understanding equations and just vague symbols. I recommend that you have a look at an introductory source of information in population genetics. You will find recommendation of books in population genetics here. For a complete and relatively accessible (might still be a bit complicated) introduction to population genetics, I would recommend Gillespie's Population Genetics: A Concise Guide for you. This book will so offer proofs for the equations I gave you above.
"we still grow many unnecessary organs"- huh? Which organs are unnecessary? The liver? Kidneys? Stomach? – MattDMo Apr 24 '16 at 17:51