It's not clear whether the front and back are distinguishable (as they often are with playing cards), so I'll do the counting both ways. In both cases I'll be assuming that whatever else is printed on the cards respects the rotational symmetry of the triangles.
If the front and back are distinguishable, the symmetry group consists of the three rotations through integer multiples of $2\pi/3$. To apply Burnside's lemma, we need to count how many patterns are fixed by each symmetry element. The identity leaves all $\binom92=36$ patterns invariant. For a pattern to be fixed by a rotation through $2\pi/3$ (in either direction), the punch state would have to be the same across each of the three groups of three triangles that are rotated into each other. Since only two holes are punched, this is impossible, so none of the patterns is fixed by such a rotation. Thus by Burnside's lemma the number of inequivalent patterns is $36/3=12$.
If the front and back are indistinguishable, the symmetry group additionally contains the three reflections in the bisectors. For a pattern to be invariant under such a reflection, the two holes need to be punched either in two triangles that are both reflected into themselves, or in a pair of triangles that are reflected into each other. There are $\binom32=3$ possibilities in the first case and $\binom31=3$ in the second case, for a total of $6$. There are three such reflections, so $3\cdot6=18$ is added to the total, yielding $36+18=54$. Thus by Burnside's lemma in this case there are $54/6=9$ inequivalent patterns.
http://imageshack.us/photo/my-images/32/picxrp.jpg/
– nikos Feb 03 '13 at 13:24