Direct computation is pretty fast in this case.
The poly. $x^{63} -1 $ factors as cyclotomic polys $\Phi_d$ for $d \mid 63$, so
$d = 1, 3, 9, 7, 21, 63.$
The corresponding degrees of $\Phi_d$ are $\phi(d)$: $1, 2, 6, 6, 12, 36$.
To compute how $\Phi_d$ factors over $\mathbb F_2$, you have to compute
the subgroup of $(\mathbb Z/d)^{\times}$ generated by $2$; its index is
the number of factors.
Since all the $d$ divide $63$, and $2^6 = 64 \equiv 1 \bmod 63$, these groups,
and the corresponding indices,
are pretty fast to compute.
Ultimately, one finds $13$ factors (as was already recorded in ALGEAN's answer).