It depends what you're doing, and indeed most of the quantum optics literature dismisses the term as it does not contribute to the dynamics. However, it is important that beginning students form an intuition for how and where zero-point energies come in, and why they are necessary.
Take a look at the eigenfunctions of the harmonic oscillator, in position space:

Notice, in particular, the behaviour at the classical turning points, where the baselines cross the potential. These are the inflection points of the wavefunctions, where the oscillatory behaviour turns into exponential decay. Even for the ground state, these two points must be spatially separated, to allow the exponential decay on the left to turn round into a decreasing function and match into exponential decay on the right, and for these two points to be separated the energy of the ground state needs to be separated from the bottom of the well. This is the essence of the zero-point energy, and until you internalize all the implications of 'classically allowed' and 'classically forbidden' on the wavefunction, it's best to be explicitly reminded that it exists.
On the other hand, once you've done that, there is little point in lugging that term around. If you dig a little deeper into the literature, you'll see people start to drop the term in settings where it is not important. Some examples:
and many, many others. For a good look at what people actually use in the literature, I would recommend searching for 'quantum harmonic oscillator' on the arXiv. This will turn up many papers you won't understand, but it is not that complicated to discard the ones that don't have QHO hamiltonians in them, and distinguish the ones that use hamiltonians of the form $\tfrac1{2m}p^2+\tfrac12 m\omega^2 x^2$ from the ones that use the form $\hbar\omega a^\dagger a$.
It's also worth mentioning that you can't always drop the term. In quantum field theory in particular, you are often faced with a system that is an infinite collection of harmonic oscillators, for which vacuum energy must be treated carefully. On another branch of that, zero-point energies can have measurable effects, for example through the Casimir effect, in which case you obviously can't neglect it.