The resolution, such as it is, lies in the ideas of a particle's wave function and the probabilistic nature of measurement.
Each photon can be thought of as having a wave function that is propagating outwards from the light source. As this wave function expands, its amplitude decreases, just as a classical wave would.
However, the laws of quantum mechanics say that this wave function determines the probability of detecting the photon at any particular location. Specifically, the probability of measuring the particle near any point is proportional to the square of the magnitude of the wave function at that point. This means that we are much less likely to detect a photon within (say) 1 mm of a point 100 light-years away from the source than we are to detect it within 1 mm of a point 1 light-year from the source. Statistically, though, if we detect a large number of photons, all emitted from the source in the same manner, they will be evenly distributed over the sphere. Thus, the amount of light energy is evenly distributed over the sphere, just as we would expect classically.