The tray icons are still there, but they're just invisible. No amount of clicking will do anything to them.

Ending and then running explorer.exe is a quick fix, but then the icons return to their invisible state upon reboot. I've been dealing with this for a while now and it's starting to get on my nerves.
I have read many articles and tried a bunch of "solutions" such as:
- deleting
iconstreamsandpasticonstreamsfrom registry - installing anti-virus software
- clearing the windows icon cache
but these have not worked.
Any help would be awesome.
Can you reproduce the issue all the time? Yes, every time I reboot my computer they go invisible.
Are those invisible icons always the same ones? Usually they tend to be the same ones, but sometimes Skype is hidden and sometimes it's not, for example.
Have you run sfc /scannow in command prompt as administrator?
Windows Resource Protection did not find any integrity violations.
Customize..., force Windows to not hide any tray icons, save, restart, and then switch back to "Hide Inactive" (or whatever you have it set to now). This should get rid of any stored force hide/show settings for the tray icons, which happens if you ever manually set a particular icon's force hide/show setting. – Breakthrough Jun 30 '14 at 15:25Customize...and set Windows to Show All Icons or something like that (I can't remember the setting name, but when configured, all icons should appear on the taskbar - sans the "invisible" ones, now). – Breakthrough Jun 30 '14 at 22:45Where "c:" is your system drive,what happens while u given it?
– BlueBerry - Vignesh4303 Jul 03 '14 at 11:58msconfig.exe? – arielnmz Jul 03 '14 at 17:49