A virus infected my hard drive.
The drive's capacity is 1 TB and has different type of files on it, 400 GB+ in total. Suddenly all the files disappear, and I tried to show hidden files, but it only shows the autorun and a shortcut (probably virus). Its total capacity became 500 GB from 1 TB and the space occupied is 1 GB-, so I'm pretty confident that my files are hidden somewhere.
Just to be clear:
Before: 400 GB+ (space occupied) / 900 GB+ (total space)
Now: 800 MB+ (space occupied) / 563 GB (total space)
Screen shot:

have you tried using WinDirStat to see exactly where your space is going?
It may not be able to show you the files if the're hidden but should still show you the directory.
https://windirstat.info/download.html
– Lelantos Jul 10 '15 at 09:27