I encountered the following problem while preparing my CV. There are a few links prepared by hyperref that are not broken in several lines. I am wondering if there is a way to fix this problem. This is a minimal working example:
\documentclass{article}
\usepackage[utf8]{inputenc}
\usepackage[left=1.8in,right=1.8in,top=0.6in,bottom=0.6in]{geometry}
\usepackage[usenames,dvipsnames,svgnames,table]{xcolor}
\usepackage{hyperref}
\definecolor{linkcolour}{rgb}{0,0.2,0.6}
\hypersetup{colorlinks=true,
breaklinks=true,
urlcolor=linkcolour,linkcolor=linkcolour,
citecolor=NavyBlue}
\begin{document}
\begin{itemize}
\item A.~M.~Aragón, S.~Soghrati, and P.~H.~Geubelle. In-plane deformation effect on the cohesive failure of heterogeneous adhesives: a multi-scale analysis based on a 3D generalized finite element scheme, \emph{Journal of the Mechanics and Physics of Solids}, Published online; doi: \href{http://dx.doi.org/10.1016/j.jmps.2013.03.003}{http://dx.doi.org/10.1016/j.jmps.2013.03.003}
\item A.~M.~Aragón, S.~Soghrati, and P.~H.~Geubelle. In-plane deformation effect on the cohesive failure of heterogeneous adhesives: a multi-scale analysis based on a 3D generalized finite element scheme, \emph{Journal of the Mechanics and Physics of Solids}, Published online; doi: \url{http://dx.doi.org/10.1016/j.jmps.2013.03.003}
\end{itemize}
\end{document}
The result of this code is as follows:

Also, is there a way to use bibtex entries in the middle of a document as they show up in the end of an article? I need to put a list of publications and the only way I managed to do this is just writing regular text to mimic the bibtex entries.
bibtexentries, you should look atbiblatexand its\fullcitecommands. It should also provide a workaround to the previous problem, since you can use the\urlfield in the.bibentry. – T. Verron May 01 '13 at 09:30biblatexmanual is by itself an excellent reference, although "too much for the job". For more specific tutorials, you can have a look at the questions taggedbiblatexon this site, and in particular this one to get started: http://tex.stackexchange.com/questions/5091/what-to-do-to-switch-to-biblatex – T. Verron May 01 '13 at 13:34