Here's my minimal problem-causing example:
\documentclass{standalone}
\usepackage{fixltx2e}
\usepackage{amsmath}
\begin{document}
\begin{subequations}
\begin{align}
a &= b + c\\
a' &= b' + c'\\
\end{align}
\end{subequations}
\end{document}
Here's the log output:
line 14: Missing \endgroup inserted \end{align}
line 14: Missing \endgroup inserted \end{align}
line 14: Missing } inserted \end{align}
line 14: \begin{document} ended by \end{align}. \end{align}
line 14: Missing $ inserted \end{align}
line 14: Display math should end with $$ \end{align}
line 14: Extra \endgroup \end{align}
line 15: \begin{document} ended by \end{subequations}. \end{subequations}
line 15: Extra \endgroup \end{subequations}
line 17: Too many }'s \end{document}
What is the issue?
standaloneunless you're using thevarwidthoption. – egreg Jun 29 '14 at 21:04alignstructure with a double backslash -- it adds an unwanted blank line following the display. – barbara beeton Jun 29 '14 at 21:42