Latex and Tikz are going to get the life out of me...
I saw Need to do some changes to pgfplots axis #39099, and that example was working fine for me; so I modified it a bit, and came up with the following MWE:
\documentclass[10pt,a4paper]{article}
\usepackage[hmargin=3cm,vmargin=2cm]{geometry}
\usepackage{floatrow}
\usepackage{tikz}
\usepackage{pgfplots}
% \usepackage{lua-visual-debug}
\begin{document}
\begin{figure}[H]%[h!tbp]
\centering
\begin{tikzpicture}
\begin{scope}
\begin{axis}[
clip=true,
axis x line=middle,
axis y line=middle,
xmin = 2.5e-3,
xmax = 4.2e-3,
ymin = 0,
ymax = 710,
xlabel={},%{$t$\,[ms]},
xlabel style={at={(axis description cs:1.01,+0.0)},anchor=west},
ylabel={}, %{$U$\,[V]},
ylabel style={at={(axis description cs:-0.02,1.01)},anchor=south},
xtick=data,
scaled x ticks=base 10:3,
xtick scale label code/.code={}, % this to not show extra scale label
x tick label style={
rotate=-45,
anchor=west,
/pgf/number format/fixed,
/pgf/number format/fixed zerofill,
/pgf/number format/precision=3,
},
tick label style={font=\small,},
legend cell align=left,
legend pos=outer north east,
% this for "the 0 is missing from the labels";
after end axis/.code={
\path (axis cs:0,0)
node [anchor=north west,yshift=-0.075cm,xshift=-0.4em] {0}
node [anchor=east,xshift=-0.075cm] {0};
}
]
\addplot[mark=*] coordinates {(2.9e-3,400)};
\end{axis}
\end{scope}
\end{tikzpicture}
\end{figure}
\end{document}
Why is it then, that this MWE results with this:
... that is, the 0,0 stick to left of the margin, plot itself is to the right, overflowing the margin - all that while \centering being issued?
And if you comment out the after end axis/.code={...} part - then everything works as expected?!
What am I missing here?

axis csreally tries to go to the literally zero data value,rel axis csinstead assumes that the visible plot is parametrized with a number between 0 and 1. – percusse Jul 05 '14 at 10:19