I have LoF and LoT before my ToC. For some reason ToC present Chapter 1 before LoF, even though in the report it is the opposite. And the page number is wrong, the LoT in on iii, just after ToC.
\documentclass[10 pt, a4paper, leqno, oneside] {report}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{lscape}
\usepackage{caption}
\usepackage{subfig}
\usepackage[section]{placeins}
\usepackage{listings}
\usepackage{url}
\usepackage{longtable}
\usepackage{multirow}
%\usepackage{geometry}
\usepackage{graphicx}
%\usepackage[export]{adjustbox}
\usepackage[table]{xcolor}
\usepackage[swedish, english]{babel}
\usepackage[tmargin=1cm]{geometry}
%\usepackage{blindtext}
\begin{document}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% The title page %%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\input{titlepage}
\cleardoublepage \pagenumbering {roman}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% The Abstract Page %%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\chapter*{Abstract}
\addcontentsline{toc}{chapter}{Abstract}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% TOC %%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\tableofcontents{}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% List of Tables %%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{ListofTables}
\addcontentsline{toc}{chapter}{List of Tables}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% List of Figures %%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{ListofFigures}
\addcontentsline{toc}{chapter}{List of Figures}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapters %%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\setcounter{page}{1}
\cleardoublepage \pagenumbering{arabic}
\include{chapter1} %Background
\include{chapter2} %Theory
\include{chapter3} %Results
\include{chapter4} %Analysis and conclusions
\include{chapter5} %Discussions
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Bibliography %%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibliographystyle{unsrtnat} %{amsplain}
\bibliography{Bibliography}
\addcontentsline{toc}{chapter}{Bibliography}
\include{Bibliography} %Bibliography
\end{document}

\input{titlepage} \cleardoublepage \pagenumbering {roman}
\chapter*{Abstract} \addcontentsline{toc}{chapter}{Abstract}
\tableofcontents{} \listoftables \listoffigures
\setcounter{page}{1} \cleardoublepage \pagenumbering{arabic} \include{chapter1} %Background
\bibliographystyle{unsrtnat} \bibliography{Bibliography} \end{document}
– Orongo Nov 13 '15 at 21:37\pagenumbering, it is not needed as you should habe read in How to use pagenumbering in the document? – Johannes_B Nov 14 '15 at 12:59