I'm using the classicthesis package. Unlike math in $$, an equation is not centered:
\begin{equation}
mod(\zeta, G) := \sum_{C \in \zeta} \left ( \frac{\omega(C)}{\omega(E)} - \frac{vol(C)^2}{4 \omega(E)^2} \right )
\label{eq:mod}
\end{equation}
I'd like an equation to be centered with respect to the column by default.
My preamble looks as follows:
%----------------------------------------------------------------------------------------
% PACKAGES
%----------------------------------------------------------------------------------------
\usepackage{longtable}
\usepackage{minted}
%\usepackage[backend=bibtex]{biblatex}
\usepackage{lmodern} % standard latex math font
%\usepackage{cmbright}
%\renewcommand\rmdefault{hfoldsty}
\usepackage{todonotes}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[ruled,vlined, linesnumbered]{algorithm2e} % algorithms
\usepackage{scrextend} % addmargin command comes from here
\usepackage{aurical}
\usepackage{amsthm}
\usepackage{thmtools}
\usepackage{amssymb}
\usepackage{colortbl}
%\usepackage{subcaption} % TODO: doesn't cooperate with subfig
\usepackage{pgfplots}
% https://tex.stackexchange.com/questions/174186/todonotes-group-list-of-todos-by-section
\usepackage{tocloft,xpatch}
%----------------------------------------------------------------------------------------
% COMMANDS
%----------------------------------------------------------------------------------------
% formatting
\newcommand{\term}[1]{\textit{#1}}
\newcommand{\algo}[1]{\textsf{#1}}
\newcommand{\TODO}[1]{\todo[size=\small, inline]{#1}}
% math
\newcommand{\set}[1]{ \{ #1 \} }
% function definition
\newcommand{\funcdef}[2]
{
\left\{
\begin{array}{ll}
#1 \\
#2
\end{array}
\right.
}
\newcommand{\nwk}{\textsf{NetworKit}\xspace}
%----------------------------------------------------------------------------------------
% ENVIRONMENTS
%----------------------------------------------------------------------------------------
\newenvironment{koan}
{\color{darkgray} \begin{addmargin}[6cm]{0cm} \begin{footnotesize}}
{\end{footnotesize} \end{addmargin} \bigskip }
%----------------------------------------------------------------------------------------
% THEOREMS
%------------------------------------------ ----------------------------------------------
\theoremstyle{definition}
\newtheorem{definition}{Definition}
%----------------------------------------------------------------------------------------
% CONFIG
%----------------------------------------------------------------------------------------
\graphicspath{ {graphics/} }
%\graphicspath{{../Graphics}}
% include needed for pseudocode includes
\input{Pseudocode/Distributed/pseudocodes_setup}
% include needed for TeX-generated plots
\input{graphics/Distributed/plots/plots_setup}
%----------------------------------------------------------------------------------------
% Colors
%----------------------------------------------------------------------------------------
\definecolor{bg}{rgb}{0.985,0.985,0.985}
\newenvironment{code}[1]
{
\begin{minted}[mathescape,
linenos,
numbersep=5pt,
frame=lines,
framesep=2mm,
fontsize=\footnotesize,
bgcolor=codebg]{#1}
}
{\end{minted}}
Options to documentclass:
\documentclass[
twoside,openright,titlepage,numbers=noenddot,headinclude,%1headlines,
footinclude=true,cleardoublepage=empty,
BCOR=5mm,paper=a4,fontsize=11pt, % Binding correction, paper type and font size
ngerman,american, % Languages
]{scrreprt}

classicthesis, the package? Please share your preamble as well. – Alenanno Dec 30 '15 at 12:51classicthesispackage. Is your Tex Live distribution up to date? – Alenanno Dec 30 '15 at 13:03\documentclasscommand, are you loading any options there? – Alenanno Dec 30 '15 at 14:06fleqnoption to\documentclass– egreg Dec 30 '15 at 14:07\documentclasswith all the options. Also, read your warnings: you have unused options (namely,correction, paper type and font size) and some conflict between your KOMA-script class andtitlesec. – Alenanno Dec 30 '15 at 16:17classicthesis-config.texinstead of the default? https://gist.github.com/anonymous/6849a7d9ac2ac3891126 – clstaudt Dec 30 '15 at 16:22\PassOptionsToPackage{fleqn}{amsmath}. Remove this line. – Henri Menke Dec 30 '15 at 16:47