I am using the Cleanthesis LaTeX style, which is itself based in the Koma-Script 'report' class, and sometimes I see page breaks directly after a \section or \subsection. I have not been able to reproduce this without using Cleanthesis but it is fairly easy to reproduce it with Cleanthesis.
In order to reproduce it, create an example.tex file with the following contents:
\chapter{Chapter}
\section{Section}
\subsection{Subsection}
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
\section{Section 2}
\subsection{Subsection 2}
Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
Then edit the default my-thesis.tex to include only this file:
[...]
%\input{content/chapter-introduction} % INCLUDE: introduction
%\input{content/chapter-related-work} % INCLUDE: related work
%\input{content/chapter-system} % INCLUDE: system
%\input{content/chapter-concepts} % INCLUDE: concepts
%\input{content/chapter-conclusion} % INCLUDE: conclusion
\input{example}
[....]
The result looks like this:
Any hints on why this may be happening or how to fix it ?


\clearpagecommand which will be wrong as soon as the text changes. – Grodriguez Oct 18 '17 at 16:16cleanthesisusestitlesecto format the section titles. So it disables most of the KOMA-Script features regarding the section titles. I am sure that you get warnings. – esdd Oct 18 '17 at 16:18developbranch? – Johannes_B Oct 22 '17 at 07:03