i appear to be having a similar issue as described in other minted issue
however my issue differs that none of the solutions there work.
No matter how many times i uninstall/reinstall minted or miktex and pygments i still can not get it working. Removing the auxillary files also do not work and i keep getting the
Package minted Error: You must invoke LaTeX with the -shell-escape flag. \usepackage error
my sample code is detailed here:
\usepackage{subcaption} %This is to have multiple sub figures in a single figure
\usepackage{enumitem}%This is for Lists and adjusting the spacing between bullets
\setlist{nosep,leftmargin=*}%This is for Lists and removing the spacing between bullets
%\usepackage[labelformat=parens,labelsep=quad,skip=3pt]{caption}
\usepackage{multirow} %This is for multirow tables
\usepackage{makecell} %Allows line breaks in tables with \thead{} command
\usepackage{tabularx} %Better Table Format
\usepackage{booktabs} %Better Table Format
\usepackage{listings} %alternative method of inserting code
\usepackage[cache=false]{minted} %This is to print out code nicely
%Referencing
\usepackage[backend=biber,style=ieee]{biblatex} %Bibliography and citation
\addbibresource{C:/Users/66smi/OneDrive/University of Pretoria/Zotero/MyZoteroLibrary.bib}
%Commenting
\usepackage[colorinlistoftodos]{todonotes}%This allows for comments to appear on the PDF
\usepackage{easyReview}
%Hyperlinks and Linking - note this package often has to be the last import
\usepackage{hyperref}
\hypersetup{
colorlinks= false,
linkcolor= black,
linkbordercolor = 0 0 0,
filecolor=black,
citecolor = black,
urlcolor=black,
colorlinks=true,
linkcolor=blue,
%citebordercolor = 0 1 0,
% citecolor = green,
% filecolor=magenta,
% urlcolor = cyan,
%allcolors = blue,
%urlcolor=cyan,
}
%document headings
\title{Latex Report Template}
\author{Justin Smith}
\begin{document}
\singlespacing %single line spacing
%Cover Page
%If a specific Front Matter Is desired
%Option 1
%\maketitle
%\textbf{This page represents the cover page}\newline
%\textit{Report will begin here}
%\thispagestyle{empty}
%\pagebreak
%end option 1
%Option 2
%\setcounter{secnumdepth}{0} %this command can remove all the section numbers from the article
%document headings
\begin{center}
{\Huge Title} \[18pt]
{\LARGE Sub-Title } \[18pt]
{\LARGE Smith J, 19065320 }\[18pt]
{\LARGE \today} \[18pt]
\end{center}
%Plagiarism Declaration
\textbf{It is hereby declared that this is my own work and appropriate reference has been made to other people’s work (e.g. indicate at each question with whom you discussed the question.)}
\thispagestyle{empty} %This removes the page number from the cover page
%End Plagiarism Declaration
\pagebreak
%End Option 2
%Executive Summary
\section*{Executive Summary}
Here lies the Executive summary which is before the table of contents.
\setcounter{page}{0}
\pagenumbering{roman}
\pagebreak
%End Exec Summary
%Table of Contents
\renewcommand*\contentsname{Table Of Contents}
\addcontentsline{toc}{section}{Executive Summary}
\tableofcontents
\addcontentsline{toc}{section}{Reference List}
\newpage
%End Table of Contents
%Main Body Formatting
\setcounter{page}{0}
\pagenumbering{arabic}
%End Main Body Formatting
\pagebreak
%Introduction
\section{Introduction}
The introduction for the report will be inserted here
\pagebreak
%Reference List
\section{References List}
\printbibliography[heading=none]
%End Reference List
\pagebreak
\appendix
\section{Appendix}
\subsection{Code Example}
\begin{minted}[breaklines=true]{python}
import numpy as np
def incmatrix(genl1,genl2):
m = len(genl1)
n = len(genl2)
M = None #to become the incidence matrix
VT = np.zeros((n*m,1), int) #dummy variable
#compute the bitwise xor matrix
M1 = bitxormatrix(genl1)
M2 = np.triu(bitxormatrix(genl2),1)
for i in range(m-1):
for j in range(i+1, m):
[r,c] = np.where(M2 == M1[i,j])
for k in range(len(r)):
VT[(i)*n + r[k]] = 1;
VT[(i)*n + c[k]] = 1;
VT[(j)*n + r[k]] = 1;
VT[(j)*n + c[k]] = 1;
if M is None:
M = np.copy(VT)
else:
M = np.concatenate((M, VT), 1)
VT = np.zeros((n*m,1), int)
return M
\end{minted}
%End Appendix
\end{document}

--shell-escapeflag. This is becausemintedcalls a Python program to generate the syntax highlighting. – olirwin Jul 06 '23 at 13:58