I was able to reproduce the error and to fix it.
Let's start to examine a simple document with a plot and a resistor:
\documentclass[a4paper,11pt]{article}
\usepackage{circuitikz}
\usepackage{pgfplots}
\pgfplotsset{compat=1.7}
\usetikzlibrary{external}
\tikzexternalize
\tikzset{external/force remake}
\begin{document}
\begin{tikzpicture}
\begin{axis}[view={60}{30}]
\addplot3+[domain=0:5*pi,samples=60,samples y=0]
({sin(deg(x))},
{cos(deg(x))},
{2*x/(5*pi)});
\end{axis}
\end{tikzpicture}
\begin{circuitikz}
\draw (0,0) to[R, i^<=$i_1$] (2,0);
\end{circuitikz}
\end{document}
The compilation with pdflatex -shell-escape test.tex raise an error:
! Package tikz Error: Sorry, the system call 'pdflatex -shell-escape -halt-on-e
rror -interaction=batchmode -jobname "test-figure0" "\def\tikzexter
nalrealjob{test}\input{test}"' did NOT result in a usab
le output file 'test0' (expected one of .pdf:.jpg:.jpeg:.png
:). Please verify that you have enabled system calls. For pdflatex, this is 'pd
flatex -shell-escape'. Sometimes it is also named 'write 18' or something like
that. Or maybe the command simply failed? Error messages can be found in 'test-figure0.log'. If you continue now, I'll try to typeset the picture.
The problem, I suspect, is due to the fact that when the compiler encounters \begin{circuitikz} it is not able to process it.
Thus I tried to modify the previous example into:
\documentclass[a4paper,11pt]{article}
\usepackage{circuitikz}
\usepackage{pgfplots}
\pgfplotsset{compat=1.7}
\usetikzlibrary{external}
\tikzexternalize
\tikzset{external/force remake}
\begin{document}
\begin{tikzpicture}
\begin{axis}[view={60}{30}]
\addplot3+[domain=0:5*pi,samples=60,samples y=0]
({sin(deg(x))},
{cos(deg(x))},
{2*x/(5*pi)});
\end{axis}
\end{tikzpicture}
\begin{tikzpicture} % NOTICE the environment
\draw (0,0) to[R, i^<=$i_1$] (2,0);
\end{tikzpicture} % NOTICE the environment
\end{document}
Compiling again with pdflatex -shell-escape test.tex, the result is:

Notice, indeed, that the environment circuitikz is defined simply as:
\newenvironment{circuitikz}{
\begin{tikzpicture}}{\end{tikzpicture}}
thus you can also draw circuits with the standard environment tikzpicture without problems.