I have migrated from OS X/TeXShop to Linux/TeXMaker. Something in the configuration must be different, because my project doesn't build the bibliography any longer.
I tried the sequence pdflatex > bibtex (biber) > pdflatex.
My original setting was like this:
% NOTE: do not use backend=biber, this fucks up everything. ignore the uf8 warning,
% we do _not_ use utf8 characters in the .bib files, I don't know where that comes from.
\usepackage[natbib=true,citestyle=verbose-ibid,isbn=false,maxnames=3,bibstyle=authoryear,useprefix=true,citereset=chapter]{biblatex}
This worked on the Mac. On Linux, biblatex falls back to biber (I'm not sure it did on OS X), and biber finds the correct aux files, nevertheless the second pdflatex run doesn't pick up the output of biber, and I end up with an empty bibliography.
If I do add backend=biber to the above statement, then there are messed up aux files (and this is probably why I put the comment originally):
INFO - This is Biber 1.8 INFO - Logfile is 'main.aux.blg'
ERROR - Cannot find control file 'main.aux.bcf'! - did you pass the "backend=biber" option to BibLaTeX? INFO - ERRORS: 1
So what is wrong here?
biber main.aux, butbiber main(orbiber main.bcf). – egreg Mar 06 '14 at 10:03