If I use a footnote within a column, that footnote is in an inconvenient place (at the bottom of that column), so I solved that by using the [frame] option, which puts the note at the bottom of the frame (the poster).
Here it is with \footnote{a footnote}:

And here it is with \footnote[frame]{a footnote} which looks as I wish it to, but with the extra blank page at the beginning:

This code produces the above documents:
\documentclass[10pt]{beamer}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{lmodern}
\usepackage[orientation=portrait, size=custom, width=80, height=40, scale=2]{beamerposter}
\begin{document}
\begin{frame}{}
\begin{block}{\veryHuge A title for my poster}
\LARGE By askewchan
\end{block}
\begin{columns}[T]
\column{.5\linewidth}
some text in a column
\column{.5\linewidth}
%some more text in another\footnote{a footnote} column
some more text in another\footnote[frame]{a footnote} column
\end{columns}
\end{frame}
\end{document}
Any ideas how to avoid this? I'd rather not manually place them if possible.

\usepackage{atbegshi} \AtBeginDocument{\AtBeginShipoutNext{\AtBeginShipoutDiscard}}in your preamble (following the advice in How to remove a blank page “before” the title page). – Werner Jul 15 '14 at 19:17