My supervisor would like my compounds refrences in the form (1), (2), (3).
Using numbers is easy: drop \setchemnum{counter-format=arabic} in the preamble. But I can't figure out brackets. The manual has an example on pg 18 that gives exactly the output I want:
\cmpd[pre-label-code=(,post-label-code=)]{x, y, z.one }
But, as per pg 12--13, these are "cmpd" options, and thus I'd have to specify them for each and every compound, the first time I reference it. Is there a way to specify this globally that I'm not seeing, so I don't have to worry about which reference is the first one, and worry about missing one, assigning it each time, and so on?

\newcommand*\cmpdformat[1]{(\textbf{#1})}and\setchemnum{format=\cmpdformat}should work. – cgnieder May 09 '16 at 23:42\cmpd{main.sub}… – cgnieder May 10 '16 at 18:43