EDIT: This is an answer to the revised question. For the original version, see below.
Memoir offers similar functionality to that provided by titlesec (p. 339). If you use both, you have two things trying to control the format of sectional divisions, the contents of marks and the format of headers. If you want to use titlesec, use titleps to configure headers, footers and marks. If you want to use Memoir, don't load titlesec. Instead, use the facilities provided by Memoir.
Your \titleformat for \section is essentially equivalent to
\setsecheadstyle{\large\bfseries}
because the indentation between label and title is irrelevant if you aren't numbering the sections or printing the label anyway and block is pretty much the default look. So the only thing the \titleformat command is really doing is substituting \large for \Large. Fair enough, but you can easily do that using Memoir's \setsecheadstyle, as explained on p. 95. This section also explains how to configure the other sectional divisions, including adjustments to vertical spacing before and after the heading, indentation and so on. If you use these commands, then your customisation of marks and headers using Memoir will be effective in your document. Otherwise, you need to redo that code to take account of the changes made by titlesec.

\documentclass[a5paper,11pt,twoside,onecolumn,openright,extrafontsizes]{memoir}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage[osf]{Alegreya,AlegreyaSans}
\usepackage[tracking=true,letterspace=50]{microtype}
% setspace is emulated - see p. 339 - so loading the package is blocked, but the emulation is not complete
\makeatletter
\newcommand{\setstretch}[1]{% from setspace.sty
\def\baselinestretch{#1}%
\@currsize
}
\makeatother
% see p. 339 of Memoir's docs re. titlesec - you can use it, but you'll lose Memoir's equivalent functionality which cooperates with headers, marks etc.
\usepackage{lipsum} % to generate Lorem Ipsum
% \parskip is 0 by default
\setstretch{1.15}% see setspace.sty for details
\SetTracking{encoding=*,shape=sc}{100}
% tracking adjustments for small caps
\DeclareMicrotypeSet*[tracking]{alegreyasc}
{font = */AlegreyaSC-TLF/*/*/*}
% defining the title and the author
\title{My Title}
% chapter title manipulation
% padding with zero
\renewcommand*\thechapter{\ifnum\value{chapter}<10 0\fi\arabic{chapter}}
\setcounter{secnumdepth}{0}
\setsecheadstyle{\large\bfseries}% p. 95
% HEADER AND FOOTER MANIPULATION
% for normal pages
\nouppercaseheads
\makeatletter
\newcommand*\headerfont[1]{%
\renewcommand*\mystyle@headerfont{#1}%
}
\newcommand*\mystyle@headerfont{\scshape}
\makepagestyle{mystyle}
\setlength{\headwidth}{\dimexpr\textwidth+\marginparsep+\marginparwidth\relax}
\makerunningwidth{mystyle}{\headwidth}
\makeevenhead{mystyle}{}{\mystyle@headerfont\thetitle}{}
\makeoddhead{mystyle}{}{\mystyle@headerfont\leftmark}{}
\makeevenfoot{mystyle}{}{\mystyle@headerfont\thepage}{}
\makeoddfoot{mystyle}{}{\mystyle@headerfont\thepage}{}
\clearmark{section}
\makepsmarks{mystyle}{%
\createmark{chapter}{left}{nonumber}{\@chapapp\ }{.\ }}
\makeatother
% for pages where chapters begin
\makepagestyle{plain}
\makerunningwidth{plain}{\headwidth}
\makeevenfoot{plain}{}{}{}
\makeoddfoot{plain}{}{}{}
\pagestyle{mystyle}
% layout check and fix
\checkandfixthelayout
\fixpdflayout
% BEGIN THE DOCUMENT
\begin{document}
\pagestyle{mystyle}
% preface
\chapter{Chapter One}
\lipsum[1]
\section*{Section One}
\lipsum[2-10]
\end{document}
NOTE: This is an answer to the original question which has been
rendered more-or-less meaningless by an update to the question. In
particular, my answer assumed that Memoir's facilities were being used
to format the page layout, including headers, marks and so on. But the
updated question uses titlesec which obviously undermines these key
assumptions. (Probably I should delete this answer for that reason
...?)
Currently, you do not ever apply the style you define. Adding \pagestyle{mystyle} will resolve this. You also need to add a title, of course, for it to be available in headers.
I altered your font settings for the headers and footers because \textls is not defined in your example. In doing this, I created a command \headerfont{} which can be configured in one place. Right now, the headers and footers use \scshape. To use small small-caps add
\headerfont{\small\scshape}
Here's the result

Complete code:
\documentclass[a5paper,11pt,twoside,onecolumn,openright]{memoir}
\usepackage{lipsum}
\makeatletter
\newcommand*\headerfont[1]{%
\renewcommand*\mystyle@headerfont{#1}%
}
\newcommand*\mystyle@headerfont{\scshape}
\makepagestyle{mystyle}
\setlength{\headwidth}{\dimexpr\textwidth+\marginparsep+\marginparwidth\relax}
\makerunningwidth{mystyle}{\headwidth}
\makeevenhead{mystyle}{}{\mystyle@headerfont\thetitle}{}
\makeoddhead{mystyle}{}{\mystyle@headerfont\leftmark}{}
\makeevenfoot{mystyle}{}{\mystyle@headerfont\thepage}{}
\makeoddfoot{mystyle}{}{\mystyle@headerfont\thepage}{}
\clearmark{section}
\makepsmarks{mystyle}{%
\createmark{chapter}{left}{nonumber}{\@chapapp\ }{.\ }}
\makeatother
\pagestyle{mystyle}
\begin{document}
\title{My Book}
\author{Me}
\date{Now}
\maketitle
\chapter{Chapter title}
\lipsum[1]
\section*{section}
\lipsum[2-10]
\end{document}
\pagestyle{mystyle}to use your new pagestyle in your document. Note that your code does not compile because\textsland\thetitleare undefined. – esdd Sep 17 '16 at 22:38\thetitleis not a problem. Note that the OP's class is not the standardbook. – cfr Sep 17 '16 at 22:54