If you want to use a bibliography database and to generate the bibliography from there (recommended), put your references into main.bib. There are already some entries there which you probably will note need (can be removed, but they do no harm). Unfortunately main.bib does not contain the entries referenced in the sample chapters, so when LaTeXing the sample thesis the bibliography section will remain empty, and the references will appear as [?].
For demonstration purposes, add the following lines at the end of main.bib. They provide dummy entries for the sources cited in the sample thesis.
@misc{patterson:risc,
author = {Some Author},
title = {Some title}
}
@misc{rad83,
author = {Some Author},
title = {Some title}
}
@misc{ellis:bulldog,
author = {Some Author},
title = {Some title}
}
@misc{pet87,
author = {Some Author},
title = {Some title}
}
@misc{coutant:precision-compilers,
author = {Some Author},
title = {Some title}
}
@misc{gib86,
author = {Some Author},
title = {Some title}
}
@misc{thornton:cdc6600,
author = {Some Author},
title = {Some title}
}
@misc{magenheimer:precision,
author = {Some Author},
title = {Some title}
}
@misc{byte:i860,
author = {Some Author},
title = {Some title}
}
@misc{colwell:vliw,
author = {Some Author},
title = {Some title}
}
To typeset the sample thesis, enter
pdflatex main
and answer all at the prompt \files=. Then run
bibtex main
Then run pdflatex main another two times (answering all at each run) to propagate the bibliographic information and to get all cross-references right.
You don't have to touch biblio.tex. It is included by main.tex and contains the information that the bibliographic database main.bib should be used.
Here is the output of the document, 25 pages in total with the bibliography on the last page.




\citecommands and the standard-BibTeXplainbibliography style. Just write\cite{abc}, whereabcshould be a "key" to an entry in the bib file. – Mico Feb 06 '17 at 17:30