I found a way to use pandoc-citeproc to create a PDF from a markdown file with references in Bibtex and citation with footnote-like references using an edited ieee.csl file. I used miscand put the (archive) references in title field. I had to put the text in double curly brackets to not have the case etc altered. Is there a way I can put formatting information (bold, italic) in the bibtex file while keeping all info in the title field? Or is the only way to try to split my references in several fields so I can format it with the CSL?
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.bibfile usually should not contain any formatting markup. It should contain the raw data, formatting is left to the bibliography style. It should also be possible to format your bibliography with CSL, but you'll have probably more luck asking about this on a more pandoc-specific site. – moewe Jun 10 '19 at 09:40