There is no need for separate geometries for section and non-section pages. Instead, override the sectional command to insert an appropriate \vspace* at the top of the page. The following implements that under the default article class:

\documentclass{article}
\usepackage[margin=25mm]{geometry}
\usepackage{lipsum}
\let\oldsection\section
\renewcommand{\section}{%
\par
\clearpage
\vspace*{\dimexpr25mm-\baselineskip-3.5ex}% \section in article adds 3.5ex plus 1ex minus .2ex
\oldsection
}
% Add a vertical rule from the top of the page at lengths 25mm and 50mm, for reference
\usepackage{eso-pic}
\AddToShipoutPictureFG{%
\AtPageUpperLeft{%
\hspace{25mm}%
\rule[-25mm]{1pt}{25mm}%
\hspace{2mm}%
\rule[-50mm]{1pt}{50mm}%
}%
}
\begin{document}
\section{First section}\lipsum[1-10]
\section{Second section}\lipsum[1-20]
\end{document}
The removal of 3.5ex comes from the article class' definition of \section that adds a vertical skip of 3.5ex (+ 1ex - .2ex); see Where can I find help files or documentation for commands like \@startsection for LaTeX?:
\newcommand\section{\@startsection {section}{1}{\z@}%
{-3.5ex \@plus -1ex \@minus -.2ex}%
{2.3ex \@plus.2ex}%
{\normalfont\Large\bfseries}}