Compiling with errors for .bib file in TeXStudio and TexMAker

Question

I'm new to Latex using it with TexMaker on Linux.

I tried to compile my .bib file, got some errors like missing the right fonts, then some .bst and .cls files that were missing and I added them manually. Now when I compile it seems to work only partially (my references are not fully integrated in the pdf file) and I have a message saying:

Process started: pdflatex -synctex=1 -interaction=nonstopmode "bare_jrnl".tex
Could not start the command.
pdflatex -synctex=1 -interaction=nonstopmode %.tex

The font missing warnings still appear but it compiles. One think to add my .bib file has a different name from my .tex file. Tried to rename both the same but then everything crashed. Could this be the problem?

I recently tried to TeXstudio same problem... Can anyone advise?

Below the log file:

This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex 2021.3.29) 8 NOV 2021 13:30
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**bare_jrnl.tex
(./bare_jrnl.tex
LaTeX2e <2020-02-02> patch level 2
L3 programming layer <2020-02-14> (./IEEEtran.cls
Document Class: IEEEtran 2015/08/26 V1.8b by Michael Shell
-- See the "IEEEtran_HOWTO" manual for usage information.
-- http://www.michaelshell.org/tex/ieeetran/
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\@IEEEtrantmpcountC=\count169
\@IEEEtrantmptoksA=\toks14
LaTeX Font Info: Trying to load font information for OT1+ptm on input line 5
03.
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd
File: ot1ptm.fd 2001/06/04 font definitions for OT1/ptm.
)
-- Using 8.5in x 11in (letter) paper.
-- Using PDF output.
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-- This is a 10 point document.
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\CLASSINFOnormalsizeunitybaselineskip=\dimen139
\IEEEnormaljot=\dimen140
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <5> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <5> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <7> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <7> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <8> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <8> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <9> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <9> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <10> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <10> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <11> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <11> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <12> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <12> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <17> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <17> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <20> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <20> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <24> not available
(Font) Font shape `OT1/ptm/b/n' tried instead on input line 1090.
LaTeX Font Info: Font shape `OT1/ptm/bx/it' in size <24> not available
(Font) Font shape `OT1/ptm/b/it' tried instead on input line 1090.
\IEEEquantizedlength=\dimen141
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\c@IEEEbiography=\count181
\@IEEEtranrubishbin=\box46
) (/usr/share/texlive/texmf-dist/tex/latex/cite/cite.sty
LaTeX Info: Redefining \cite on input line 302.
LaTeX Info: Redefining \nocite on input line 332.
Package: cite 2015/02/27 v 5.5
)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 2019/11/30 v1.2a Enhanced LaTeX Graphics (DPC,SPQR)
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Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
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)
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Package: graphics 2019/11/30 v1.4a Standard LaTeX Graphics (DPC,SPQR)
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Package: trig 2016/01/03 v1.10 sin cos tan (DPC)
)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg
File: graphics.cfg 2016/06/04 v1.11 sample graphics configuration
)
Package graphics Info: Driver file: pdftex.def on input line 105.
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def
File: pdftex.def 2018/01/08 v1.0l Graphics/color driver for pdftex
))
\Gin@req@height=\dimen158
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)
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty
Package: array 2019/08/31 v2.4l Tabular extension package (FMi)
\col@sep=\dimen160
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\NC@list=\toks16
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)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def
File: l3backend-pdfmode.def 2020-02-03 L3 backend support: PDF mode
\l__kernel_color_stack_int=\count182
\l__pdf_internal_box=\box49
)
(build/bare_jrnl.aux)
\openout1 = `bare_jrnl.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 350.
LaTeX Font Info: ... okay on input line 350.
-- Lines per column: 58 (exact).
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count183
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\everyMPshowfont=\toks17
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\makeMPintoPDFobject=\count188
\everyMPtoPDFconversion=\toks18
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
Package: epstopdf-base 2020-01-24 v2.11 Base part for package epstopdf
Package epstopdf-base Info: Redefining graphics rule for `.eps' on input line 4
85.
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
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))
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <9> on input line 438.
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <6> on input line 438.
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <5> on input line 438.
LaTeX Font Info: External font `cmex10' loaded for size
(Font) <7> on input line 481.
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File: ../impro-hrp/figures/1_K_456.jpeg Graphic file (type jpg)
<use ../impro-hrp/figures/1_K_456.jpeg>
Package pdftex.def Info: ../impro-hrp/figures/1_K_456.jpeg used on input line
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(pdftex.def) Requested size: 252.0pt x 392.00493pt.
[2 <../impro-hrp/figures/1_K_456.jpeg>]
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[3 <../impro-hrp/figures/2_heart_robot.jpeg>]
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<use ../impro-hrp/figures/2_sans_objet.jpg>
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<use ../impro-hrp/figures/3_rinaldo.jpg>
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<../impro-hrp/figures/3_kob.jpg, id=24, 1204.5pt x 802.49812pt>
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<use ../impro-hrp/figures/3_kob.jpg>
Package pdftex.def Info: ../impro-hrp/figures/3_kob.jpg used on input line 592
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[5 <../impro-hrp/figures/3_rinaldo.jpg>] [6 <../impro-hrp/figures/3_kob.jpg>]
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line 607.
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[7 <../impro-hrp/figures/3_blind_robot.jpeg>]
(build/bare_jrnl.bbl) [8] [9
] (build/bare_jrnl.aux) )
Here is how much of TeX's memory you used:
2195 strings out of 483140
37250 string characters out of 5965151
281265 words of memory out of 5000000
17220 multiletter control sequences out of 15000+600000
572834 words of font info for 88 fonts, out of 8000000 for 9000
39 hyphenation exceptions out of 8191
30i,8n,28p,2831b,211s stack positions out of 5000i,500n,10000p,200000b,80000s
{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r
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fonts/type1/urw/times/utmr8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw
/times/utmri8a.pfb>
Output written on build/bare_jrnl.pdf (9 pages, 3889570 bytes).
PDF statistics:
61 PDF objects out of 1000 (max. 8388607)
38 compressed objects within 1 object stream
0 named destinations out of 1000 (max. 500000)
31 words of extra memory for PDF output out of 10000 (max. 10000000)