Question.
I have the following files that, together, form my MWE:
main.texSupplementaryMaterial.texwlscirep_modified.cls(from Template for submissions to Scientific Reports Official)latexmkrc(from Cross referencing with the xr package in Overleaf)
I made a few minor modifications to the \documentclass called wlscirep.cls, that I indeed renamed as wlscirep_modified.cls.
From the main.tex I would need to cross-reference two tables that are in an external file called SupplementaryMaterial.tex, but once I tried to reference those two tables I got the following result:
As you can see, I do not get the full names of the captions, i.e. "Supplementary Table 1" and "Supplementary Table 2", and I just get the number "1" as cross-reference for the first table, and a double question mark "??" as cross-reference for the second table (which is a "longtblr").
My desired output would be, therefore, the following one:
Do you have any suggestion on how to get my desired output please?
Used files.
main.tex
\documentclass[twocolumn,fleqn,10pt,dvipsnames,table]{wlscirep_modified}
\usepackage{xcolor}
\title{Using the xr package on Overleaf}
%----Helper code for dealing with external references----
% (by cyberSingularity at http://tex.stackexchange.com/a/69832/226)
\usepackage{xr}
\makeatletter
\newcommand*{\addFileDependency}[1]{% argument=file name and extension
\typeout{(#1)}% latexmk will find this if $recorder=0
% however, in that case, it will ignore #1 if it is a .aux or
% .pdf file etc and it exists! If it doesn't exist, it will appear
% in the list of dependents regardless)
%
% Write the following if you want it to appear in \listfiles
% --- although not really necessary and latexmk doesn't use this
%
@addtofilelist{#1}
%
% latexmk will find this message if #1 doesn't exist (yet)
\IfFileExists{#1}{}{\typeout{No file #1.}}
}\makeatother
\newcommand*{\myexternaldocument}[1]{%
\externaldocument{#1}%
\addFileDependency{#1.tex}%
\addFileDependency{#1.aux}%
}
%------------End of helper code--------------
% put all the external documents here!
\myexternaldocument{SupplementaryMaterial}
\begin{document}
In \texttt{SupplementaryMaterial.tex} we have \ref{tab:first_table}
and \ref{tab:second_table}.
\end{document}
SupplementaryMaterial.tex
\documentclass[twocolumn,fleqn,10pt,dvipsnames,table]{wlscirep_modified}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{multirow, booktabs, tabularx, longtable}
\usepackage{multirow, makecell}
\usepackage{xurl}
\usepackage{booktabs}
\usepackage{xfp}
\usepackage{color}
\usepackage{xcolor}
% \usepackage[dvipsnames,table]{xcolor}
\usepackage{multirow, makecell}
\usepackage{tikz}
\usepackage{tabularray}
\usepackage{textcomp,gensymb}
\RequirePackage[labelfont=bf, labelsep=period]{caption}
\usepackage{caption}
\usepackage{tabularray}
% Add longtable and xcolor packages and define a color
\definecolor{white}{HTML}{FFFFFF}
% tabularray's internal package is recommended for improved formatting, including vertical bars
\UseTblrLibrary{booktabs}
% ---------------------------------------------------
% Add the word "Supplementary" just before the word "Table" in "longtblr"
% Define and setup templates
\DefTblrTemplate{caption}{supplementary}{
\DefTblrTemplate{caption-tag}{supplementary}{Supplementary Table \thetable}%
\DefTblrTemplate{caption-sep}{supplementary}{.}%
\centering
\UseTblrTemplate{caption-tag}{supplementary}%
\UseTblrTemplate{caption-sep}{supplementary}
\UseTblrTemplate{caption-text}{default}\par
}
\DefTblrTemplate{firsthead}{supplementary}{\UseTblrTemplate{caption}{supplementary}}
\DefTblrTemplate{middlehead}{supplementary}{\UseTblrTemplate{caption}{supplementary}}
\DefTblrTemplate{lasthead}{supplementary}{\UseTblrTemplate{caption}{supplementary}}
% Apply templates%
\NewTblrTheme{supplementary}{
\SetTblrStyle{caption-tag}{font=\bfseries}
\SetTblrTemplate{firsthead}{supplementary}
\SetTblrTemplate{middlehead}{supplementary}
\SetTblrTemplate{lasthead}{supplementary}
}
% Define and apply caption template in regular tables
\DeclareCaptionFormat{bfdot}{\textbf{#1}.~#3}
\captionsetup[table]{format=bfdot}
% ---------------------------------------------------
\title{Supplementary Information for...}
\author[1]{Luke}
\affil[1]{University of }
\begin{document}
\maketitle
\section{Supplementary Text}
\subsection{Notes about ...}
This is about...
\begin{table}[ht]
\centering
\begin{tabular}{|l|l|l|}
\hline
Condition & n & p \
\hline
A & 5 & 0.1 \
\hline
B & 10 & 0.01 \
\hline
\end{tabular}
\caption{\label{tab:first_table}Legend (350 words max). Example legend text.}
\end{table}
\rowcolors{1}{white}{white}
\NewTblrTheme{fancy}{
\SetTblrStyle{caption-tag}{font=\bfseries}
}
\begin{longtblr}[ theme=supplementary, \caption{\label{tab:second_table}Legend (350 words max). Example legend text.},]
{
colspec={m{0.9cm} m{0.1cm} m{0.6cm} m{1cm} m{3cm} m{7.3cm} m{1.5cm}},
column{6}={preto={\minipage{\linewidth}}, appto={\endminipage}},
row{1}={font=\bfseries},
row{2,5,7-8,11-13,20-26,30,33-34,36,39-40,42}={bg=white},
hline{1,Z}=0.8pt, hline{2}=0.4pt,
hline{4,8,10,12-13,15-19,21-26,28-29,32,34,38,40}=dotted,
hline{3,5-7,9,11,14,20,27,30-31,33,35,36-37,39,41,42-43}=solid,
rowhead=1
}
Day
&
& Month
& Hours
& Event
& Description
& Further Info
\\
%-------------------------------------------------
Friday
& $6$
& February
& 08 $-$ 19
& Musical festival
&
Something here ...
& Multiple
\\
%-------------------------------------------------
\SetCell[r=2]{l} Saturday
& \SetCell[r=2]{l} 8
& \SetCell[r=2]{l} February
& 08
& Birthday
& On Saturdays...
& Multiple
\\
&
&
& 9
& Local Cup \newline
& Soemthing here...
& Single
\\
% -------------------------------------------------
\end{longtblr}
\end{document}
wlscirep_modified.cls
%
% An unofficial LaTeX class for Scientific Report articles.
%
% Copyright Overleaf (WriteLaTeX) 2016.
%
% Based on the SelfArx document class.
%
\NeedsTeXFormat{LaTeX2e}
\ProvidesClass{wlscirep}[08/08/2020, v1.4]
\RequirePackage[utf8]{inputenc}
\RequirePackage[english]{babel}
\RequirePackage{ifthen}
\RequirePackage{calc}
\AtEndOfClass{\RequirePackage{microtype}}
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
\ProcessOptions*
\LoadClass{article}
\RequirePackage{amsmath,amsfonts,amssymb}
\RequirePackage{mathptmx} % Loads the Times-Roman Math Fonts
\RequirePackage{helvet}
\RequirePackage{courier}
\RequirePackage{ifpdf}
\RequirePackage{graphicx,xcolor}
\RequirePackage{booktabs}
% Modification 1
% to use "\raggedright\arraybackslash"
% https://tex.stackexchange.com/questions/35348/errors-with-ragged-right-justification-in-tables/35350#35350
\RequirePackage{array}
% to add the option "[H]" in "\begin{figure}[H]"
% https://www.overleaf.com/learn/latex/Errors/LaTeX_Error:Unknown_float_option%60H'
\RequirePackage{float}
% Settings for the author block
\RequirePackage{authblk}
\setlength{\affilsep}{1.5em}
\renewcommand\Authfont{\fontsize{12}{12}\usefont{OT1}{phv}{b}{n}}
\renewcommand\Affilfont{\fontsize{10}{12}\usefont{OT1}{phv}{m}{n}}
\RequirePackage[left=2cm,%
right=2cm,%
top=2.25cm,%
bottom=2.25cm,%
headheight=12pt,%
letterpaper]{geometry}%
\RequirePackage[labelfont={bf,sf},%
labelsep=period,%
justification=raggedright]{caption}
% Modification 2
% Hyperref + \url: long URL with dashes won't break
% https://tex.stackexchange.com/questions/49788/hyperref-url-long-url-with-dashes-wont-break
\usepackage[hyphens]{url}
% Modification 3
\RequirePackage[colorlinks=true, allcolors=blue]{hyperref}
% \RequirePackage[colorlinks=true, allcolors=black]{hyperref}
% Set up of the bibliography style
% Modification 4
\bibliographystyle{naturemag-doi}
%
% headers and footers
%
\RequirePackage{fancyhdr} % custom headers/footers
\RequirePackage{lastpage} % Number of pages in the document
\pagestyle{fancy} % Enables the custom headers/footers
% Headers
\lhead{}%
\chead{}%
\rhead{}%
% Footers
\lfoot{}%
\cfoot{}%
\rfoot{\small\sffamily\bfseries\thepage/\pageref{LastPage}}%
\renewcommand{\headrulewidth}{0pt}% % No header rule
\renewcommand{\footrulewidth}{0pt}% % No footer rule
%
% section/subsection/paragraph set-up
%
\RequirePackage[explicit]{titlesec}
\titleformat{\section}
{\color{color1}\large\sffamily\bfseries}
{\thesection}
{0.5em}
{#1}
[]
\titleformat{name=\section,numberless}
{\color{color1}\large\sffamily\bfseries}
{}
{0em}
{#1}
[]
\titleformat{\subsection}
{\sffamily\bfseries}
{\thesubsection}
{0.5em}
{#1}
[]
\titleformat{\subsubsection}
{\sffamily\small\bfseries\itshape}
{\thesubsubsection}
{0.5em}
{#1}
[]
\titleformat{\paragraph}[runin]
{\sffamily\small\bfseries}
{}
{0em}
{#1}
\titlespacing{\section}{0pc}{3ex @plus4pt @minus3pt}{5pt}
\titlespacing{\subsection}{0pc}{2.5ex @plus3pt @minus2pt}{0pt}
\titlespacing{\subsubsection}{0pc}{2ex @plus2.5pt @minus1.5pt}{0pt}
\titlespacing{\paragraph}{0pc}{1.5ex @plus2pt @minus1pt}{10pt}
%
% tableofcontents set-up
%
\usepackage{titletoc}
\contentsmargin{0cm}
\titlecontents{section}[\tocsep]
{\addvspace{4pt}\small\bfseries\sffamily}
{\contentslabel[\thecontentslabel]{\tocsep}}
{}
{\hfill\thecontentspage}
[]
\titlecontents{subsection}[\tocsep]
{\addvspace{2pt}\small\sffamily}
{\contentslabel[\thecontentslabel]{\tocsep}}
{}
{\ \titlerule[.5pc]{.}\ \thecontentspage}
[]
\titlecontents{subsubsection}[\tocsep]
{\footnotesize\sffamily}
{}
{}
{}
[\ \textbullet\ ]
\RequirePackage{enumitem}
%\setlist{nolistsep} % Uncomment to remove spacing between items in lists (enumerate, itemize)
% Remove brackets from numbering in List of References
\renewcommand{@biblabel}[1]{\bfseries\color{color1}#1.}
%
% article meta data
%
\newcommand{\keywords}[1]{\def@keywords{#1}}
\def\xabstract{abstract}
\long\def\abstract#1\end#2{\def\two{#2}\ifx\two\xabstract
\long\gdef\theabstract{\ignorespaces#1}
\def\go{\end{abstract}}\else
\typeout{^^J^^J PLEASE DO NOT USE ANY \string\begin\space \string\end^^J
COMMANDS WITHIN ABSTRACT^^J^^J}#1\end{#2}
\gdef\theabstract{\vskip12pt BADLY FORMED ABSTRACT: PLEASE DO
NOT USE {\tt\string\begin...\string\end} COMMANDS WITHIN
THE ABSTRACT\vskip12pt}\let\go\relax\fi
\go}
%
% custom title page
%
\renewcommand{@maketitle}{%
{%
\thispagestyle{empty}%
\vskip-36pt%
{\raggedright\sffamily\bfseries\fontsize{20}{25}\selectfont @title\par}%
\vskip10pt
{\raggedright\sffamily\fontsize{12}{16}\selectfont @author\par}
\vskip18pt%
{%
\noindent
% Modification 5
% remove the "ABSTRACT" command
% {
% % \parbox{\dimexpr\linewidth-2\fboxsep\relax}{\color{color1}\large\sffamily\textbf{ABSTRACT}}
% }
}%
% \vskip10pt
{%
\noindent
\colorbox{color2}{%
\parbox{\dimexpr\linewidth-2\fboxsep\relax}{%
% Modification 6
% remove the "ABSTRACT" command
% \sffamily\small\textbf\\theabstract
}%
}%
% \vskip18pt%
% \noindent
% \parbox{\dimexpr\linewidth-2\fboxsep\relax}{%
% {\color{color1}\keywordname\hspace*{1em}} @keywords%
%}%
}%
\vskip25pt%
}%
}%
%-----------------------------------------------
\setlength{\columnsep}{0.55cm} % Distance between the two columns of text
\setlength{\fboxrule}{0.75pt} % Width of the border around the abstract
\definecolor{color1}{RGB}{0,0,0} % Color of section headings
\definecolor{color2}{gray}{1} % Color of the box behind the abstract
\newcommand{\keywordname}{Keywords:} % Defines the keywords heading name
\newlength{\tocsep}
\setlength\tocsep{1.5pc} % Sets the indentation of the sections in the table of contents
\setcounter{tocdepth}{3} % Show only three levels in the table of contents section: sections, subsections and subsubsections
\usepackage{lipsum} % Required to insert dummy text
%-----------------------------------------------
\let\oldbibliography\thebibliography
\renewcommand{\thebibliography}[1]{%
\addcontentsline{toc}{section}{\hspace*{-\tocsep}\refname}%
\oldbibliography{#1}%
\setlength\itemsep{0pt}%
}
% Modification 7
%% Automatically abbreviate journal names
%% \RequirePackage{jabbrv}
% Modification 8
\usepackage{nameref}
\usepackage{blindtext}
% Modification 9
% Hyperlinking
\RequirePackage[colorlinks=true, allcolors=blue]{hyperref}
% Modification 10
\usepackage[nameinlink,noabbrev,capitalise]{cleveref}
\Crefname{figure}{Fig.}{Figs.}
\newcommand\crefrangeconjunction{--}
\crefname{subsection}{Subsection}{Subsections}
% Modification 11
% https://tex.stackexchange.com/questions/44115/how-can-i-change-figure-caption-label
\makeatletter
\renewcommand{\fnum@figure}{Supplementary \figurename~\thefigure}
\renewcommand{\fnum@table}{Supplementary \tablename~\thetable}
\makeatother
% Modification 12
\newcommand{\Tau}{\mathrm{T}}
\usepackage{mathtools}
% Modification 13
% https://tug.org/pipermail/texhax/2003-August/000768.html
\newcommand{\sgn}{\mathop{\mathrm{\emph{sgn}}}}
% Modification 14
% from: pnas-new.cls
\RequirePackage[numbers,sort&compress,merge,round]{natbib}
% Modification 15
\newcommand{\quotes}[1]{``#1''}
latexmkrc
$sub_doc_output = 'output-subdoc';
@sub_doc_options = ();
push @sub_doc_options, '-pdf'; # Use pdflatex for compilation of external documents.
Replace '-pdf' by '-pdfdvi', 'pdfxe', or 'pdflua' if needed.
push @file_not_found, '^No file\s(.+)\s$';
add_cus_dep( 'tex', 'aux', 0, 'makeexternaldocument' );
sub makeexternaldocument {
if ( $root_filename ne $[0] ) {
my ($base_name, $path) = fileparse( $[0] );
pushd $path;
my $return = system "latexmk",
@sub_doc_options,
"-aux-directory=$sub_doc_output",
"-output-directory=$sub_doc_output",
$base_name;
if ( ($sub_doc_output ne ' ') && ($sub_doc_output ne '.') ) {
rdb_add_generated( "$sub_doc_output/$base_name.aux" );
copy "$sub_doc_output/$base_name.aux", ".";
}
popd;
return $return;
}
}
- However, I am not able yet to add the full names of the captions when I cross-reference with the external file.. Any idea? If my question is not clear enough, I can re-edit it :-)
– Ommo Nov 30 '23 at 10:16