In this example,
\documentclass{article}
\begin{document}
\begin{eqnarray*}
A&=&B,\\
C&=&D,\\
E&=&F,
\end{eqnarray*}
\begin{eqnarray*}
A&=&\mathord{B,}\\
C&=&\mathord{D,}\\
E&=&\mathord{F,}
\end{eqnarray*}
\end{document}
I would think that the two eqnarray*'s would come out perfectly aligned on the = signs, but instead the top eqnarray* comes out slightly to the left of the bottom one (the difference is less than 1 point). I assume this has to do with the fact that the lines in the top eqnarray* end with punctuation symbols, while the lines in the bottom eqnarray* end with ordinary symbols. Is this a known issue?
By the way, if I load the eqnarray package from here, the excessive space around the middle column is removed, but my centering issue remains.
