The .d suffix here means directory. Of course, this would be unnecessary as Unix doesn't require a suffix to denote a file type but in that specific case, something was necessary to disambiguate the commands (/etc/init, /etc/rc0, /etc/rc1 and so on) and the directories they use (/etc/init.d, /etc/rc0.d, /etc/rc1.d, ...)
This convention was introduced at least with Unix System V but possibly earlier. The init command used to be located in /etc but is generally now in /sbin on modern System V OSes.
Note that this convention has been adopted by many applications moving from a single file configuration file to multiple configuration files located in a single directory, eg: /etc/sudoers.d
Here again, the goal is to avoid name clashing, not between the executable and the configuration file but between the former monolithic configuration file and the directory containing them.
.d, see msw's comment on this related question at Ask Ubuntu. – Gilles 'SO- stop being evil' Nov 13 '10 at 18:09.dininit.d, but it seems almost all custom config files go to.ddirectories in RHEL/CentOS/Fedora. – LiuYan 刘研 Jul 21 '11 at 06:51.emacs.dmade me post a duplicate. – Nikana Reklawyks Oct 29 '12 at 06:46