On my debian system, /usr/bin/clear and /usr/bin/tput are part of the ncurses-bin package, and /usr/bin/clear_console is part of the bash package.
Why should the default .bash_logout assume that the ncurses-bin package is installed?
Also, if run from a Linux virtual terminal (not from a serial or pseudo tty) clear_console(1) will also clear the scrollback buffer (in addition to sending the clear/cl terminfo escape).
It will do that by switching back and forth to another vt [1], and by sending the \e[3J "flush scrollback" escape.
On newer systems, clear and tput clear will also send that \e[3J escape (but not on many distros still in use, eg. Centos 7 or Debian 9 -- on the latter, the TERM environment variable should be set to linux3.0, which is not the default).
See the source of clear_console here.
[1] which may be defeated by the vgacon.scrollback_persistent=1 boot param, if your kernel was compiled with the VGACON_SOFT_SCROLLBACK option ("Enable Scrollback Buffer in System RAM").