It then seems to me that the 2nd-Incompleteness Theorem is in a sense philosophically trivial for we are already assuming the consistency of our axioms before hand therefore the consistency of the whole system.
Suppose that there's a genuine issue about whether the theory $T$ is consistent. Then even before we'd ever heard of Gödel's Second Theorem, we wouldn't have been convinced of its consistency by a derivation of $\mathsf{Con}_T$ inside $T$ (where $\mathsf{Con}_T$ codes up the the claim '$T$ can't prove $0 = 1$'). For we could just note that if $T$ were in fact inconsistent, we'd be able to derive any $T$-sentence we like in the theory -- including a false statement of its own consistency!
And the Second Theorem shows that we would indeed be quite right not to trust a theory's announcement of its own consistency! For (assuming $T$ includes enough arithmetic), if $T$ entails $\mathsf{Con}_T$, then the theory must in fact be inconsistent.
OK. However, the real impact of the Second Theorem isn't in the limitations it places on a consistent theory's proving its own consistency. The key point is this. If a nice arithmetical theory $T$ can't even prove itself to be consistent, it certainly can't prove that a richer theory $T^+$ is consistent (since if the richer theory is consistent, then any cut-down part of it is consistent). Hence we can't use 'safe' reasoning of the kind we can encode in ordinary arithmetic to prove that other more 'risky' mathematical theories are in good shape.
For example, we can't use unproblematic arithmetical reasoning to convince ourselves of the consistency of set theory (with its postulation of a universe of wildly infinite sets).
And that is a hugely interesting result, for it seems to sabotage what is called Hilbert's Programme. That Programme is precisely the project of trying to defend the wilder reaches of infinitistic mathematics by giving consistency proofs which use only 'safe' methods. (And indeeed, that was an attractive programme. Theories like set theory may be about wildly infinitary worlds. But the point to emphasize -- the point that Hilbert and Bernays saw -- is that set theory itself involves finite proofs in a finitely characterised language, so we might hope to prove results about the theory, like consistency, using only finitary reasoning. Now, Gödel saw that the relevant finitary reasoning can be treated as arithmetic reasoning after we'd coded up facts about the theory's sentences using numbers. But then, to repeat, since arithmetic, assuming it consistent, can't even prove its own consistency, it can't prove stronger theories consistent.
You'll find lots more about this in the usual textbooks that cover Gödel's Theorems (including mine).