An example interpolation of 4D data:
Interpolation[Join[#, {RandomReal[]}] & /@ Tuples[Range@10, 3]]
For Interpolation to treat the indexing as regular the indices must be in ascending order, with the right-hand side iterating first (e.g. {1,1,1}, {1,1,2}, {1,1,3}). Note that Tuples is automatically in the right order if the provided array is in the right order.
Edit: Your code is almost correct, except that you should Flatten to the second level, not the first. Also by default Table will use "1" as its step-size, you need to specify the step-size if the step is going to be different from 1. Note that Interpolation will throw a warning about reducing the order because you only have 2 points per dimension.
data = Flatten[Table[{{x, r, t}, RandomReal[]},
{x, 0, 1}, {r, 0, 0.12, 0.12}, {t, 0, 1}], 2];
intfunc = Interpolation@data;
Rcomponent to yourTable. – user21 Aug 26 '14 at 14:22